API

celltype

get_celltype(input[, out, background, ...])	Annotating genesets using LLM, providing cell types, supporting gene markers, reasons, and potential cell state annotations.
get_subtype(input[, out, celltype, ...])	Annotating cell subtypes using LLM, providing cell types, supporting gene markers, reasons, and potential cell state annotations.
check_celltype(input[, out, background, ...])	Check the reason why genesets are annotated as these celltypes.
list_celltype(num, background, provider, ...)
get_cellstate(input[, out, background, ...])	Annotating cell type state using LLM.

pathway

depict_pathway(input[, out, celltype_dic, ...])	interpret GO term or pathway with actual biological context using LLM.
name_pathway(input[, out, background, key, ...])	Process naming and analysis using LLM.
analyse_pathway(input[, out, background, ...])	Biological Process Analysis Using LLM.

utilities

score_heatmap(score_dic[, cutoff, figsize, cmap])
get_marker_from_seurat(path)	generate a gene dict from Seurat FindAllMarkers output csv file
set_api_key(api_key[, provider])	set api key for different providers